Why You Have Low Estrogen (And What To Do!)

by Deborah Maragopoulos FNP | Jul 18, 2024 | Hypothalamus, Women's Health | 2 comments

Why do you have low estrogen and what can you do about it?

Let's talk about it. 

If you have low estrogen, there are a few reasons that might be:

1. Ovarian Failure

Meaning you've literally run out of eggs.

You need to have so many oocytes whose theca cells are able to produce enough androgens to convert into estrogen. Once you start losing those oocytes, you cannot produce enough estrogen.

Ovarian failure is typically called premature ovarian failure in women under the age of 40 and perimenopause or menopause over the age of 40. In order to check your ovarian reserve, your health care provider will order a serum anti-mullerian hormone.

To check if your estrogen levels are truly low, you can get a serum FSH on day three to five if you're still menstruating or anytime of the month if you're not. An FSH over 15 to 20 when you're still menstruating means your estrogen leave;s are too low for you. If your FSH is over 30, that indicates menopause. 

2. Hypothalamic Dysfunction

You may have low estrogen because you have hypothalamic dysfunction.

We commonly see that with hypothalamic amenorrhea where your hypothalamus is not functioning normally so that you're not producing enough gonadotropin-releasing hormone and your pituitary does not stimulate your ovaries to produce estrogen.

Hypothalamic dysfunction is classic in perimenopause and menopause and can be mitigated with hypothalamic nutraceutical support with Genesis Gold®.

 3. Poor Diet

Your estrogen can be low if you’re undernourished or malnourished.

Your hypothalamus is incredibly sensitive to your nutrition. A plant-based diet rich in healthy fats and Ed equate protein can help balance your hormones. 

4. Not Enough Body Fat

You need body fat for the storage of estrogen.

Excessive exercise can cause hypothalamic dysfunction and hypothalamic amenorrhea. And that will cause lower levels of estrogen production as well. Decreasing excessive exercise and gaining some weight can help.

5. Stress

High levels of stress especially over time can over activate your HPA axis which will interfere with your hypothalamic-pituitary-ovarian axis resulting in low estrogen.

Lowering your stress or mitigating your stress reaction with mind-body exercises can help. Getting enough sleep can reduce physiological stress and help balance your hormones.

To raise your estrogen levels naturally, you must support your hypothalamus nutraceutically. Your hypothalamus is not protected by the blood brain barrier so it’s sensitive to what you eat as well as nutraceuticals which is why Genesis Gold® is effective at treating hypothalamic dysfunction. 

If you have questions, please join us in our Hormone Reboot Training.

Hormone Reboot Training

Frequently Asked Questions:

Can your hypothalamus cause weight gain?

Yes. The hypothalamus is the master regulator of metabolism, controlling how your body stores and burns energy through its signaling to the thyroid, adrenals, and pancreas. When the hypothalamus becomes dysregulated by chronic stress, poor sleep, inflammation, or blood sugar instability, it defends a higher weight "set point" — causing the body to hold onto fat regardless of diet or exercise. This makes hypothalamic dysfunction an upstream root cause of stubborn weight gain.


What is a weight set point and why won't mine move?

A weight set point is the body weight your hypothalamus works to defend, calibrated over time by stress, sleep, hormones, and inflammation. When you diet, the hypothalamus perceives scarcity and responds by slowing metabolism, increasing hunger hormones, and suppressing satiety signals to return you to that set point. This is why most people regain lost weight within two to five years of conventional dieting — the set point itself was never recalibrated, only temporarily overridden.


Why do I gain weight under stress even when I'm not eating more?

Chronic stress raises cortisol, which disrupts blood sugar regulation, promotes abdominal fat storage, and signals the hypothalamus that the body is under threat. In survival mode, the hypothalamus defends fat stores and slows metabolism — so weight can increase even without any change in calorie intake. The stress chemistry, not the food, is driving the weight gain, which is why stress reduction is essential to any lasting metabolic reset.


Why do I regain weight after stopping GLP-1 medications?

GLP-1 medications work peripherally on appetite and gastric signaling, but they do not address the underlying hypothalamic dysregulation that sets your defended weight. Because the hypothalamic set point is never recalibrated, the body resumes defending its original weight once the medication stops — leading to significant regain. Long-term success requires restoring hypothalamic regulation so the set point itself lowers, rather than relying on appetite suppression alone.


How long does it take to reset your metabolism?

Genuine metabolic recalibration takes a minimum of 90 days, because the hypothalamus needs consistent signals of safety and sufficiency before it will lower its defended set point. This differs from a diet, which produces temporary suppression the body quickly corrects. A 90-day reset typically moves through three phases: stabilizing stress chemistry (days 1–30), rebuilding metabolic efficiency (days 31–60), and lowering the weight set point (days 61–90).


Why does my thyroid feel slow even though my labs are "normal"?

Under chronic stress, the body converts thyroid hormone into reverse T3, which blocks active thyroid receptors and slows metabolism at the cellular level — even when standard lab values appear normal. This means you can experience genuine symptoms of slow metabolism, such as fatigue, cold intolerance, and brain fog, while your thyroid panel looks unremarkable. Addressing the upstream hypothalamic and stress signaling often improves thyroid conversion and symptoms.


Is stubborn weight gain a willpower problem?

No. Stubborn weight gain is a signaling problem, not a willpower problem. The hypothalamus governs weight through survival mechanisms that operate below conscious control — defending its set point by slowing metabolism and increasing hunger when it perceives threat. No amount of discipline can override this system; lasting change comes from restoring hypothalamic regulation through reduced stress, balanced blood sugar, restorative sleep, and targeted nutritional support.

About the Author - Deborah Maragopoulos FNP

Known as the Hormone Queen®️, I’ve made it my mission to help everyone - no matter their age - balance their hormones, and live the energy and joy their DNA and true destiny desires. See more about me my story here...

     

Last Updated: July 18, 2024

2 Comments

  1. Elina

    Really love this post, it is very insightful and provides a lot of helpful information. Thanks for contributing to an increased awareness!

    Reply

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